Ubuntu: Error on installing RSPerl



Question:

I have Perl version 5.14.2 and R installed on Ubuntu 12.04 and had a problem while trying to install RSPerl. I followed the instructions on the guide in omegahat.org, and ran the command

R CMD INSTALL  --configure-args='--with-in-perl' RSPerl  

and the following error occured:

* installing to library ‘/usr/local/lib/R/site-library’  * installing *source* package ‘RSPerl’ ...  checking for perl... /usr/bin/perl  No support for any of the Perl modules from calling Perl from R.  *****************************************************           Set PERL5LIB to /usr/local/lib/R/site-library/RSPerl/perl    *****************************************************  Testing: -L/usr/lib/R/lib -lR  Using '/usr/bin/perl' as the perl executable  Perl modules (no):   Adding R package to list of Perl modules to enable callbacks to R from Perl  Creating the C code for dynamically loading modules with native code for Perl:  R  modules:   R; linking:   checking for gcc... gcc  checking for C compiler default output file name... a.out  checking whether the C compiler works... yes  checking whether we are cross compiling... no  checking for suffix of executables...   checking for suffix of object files... o  checking whether we are using the GNU C compiler... yes  checking whether gcc accepts -g... yes  checking for gcc option to accept ISO C89... none needed  Support R in Perl: yes  configure: creating ./config.status  config.status: creating src/Makevars  config.status: creating inst/scripts/RSPerl.csh  config.status: creating inst/scripts/RSPerl.bsh  config.status: creating src/RinPerlMakefile  config.status: creating src/Makefile.PL  config.status: creating cleanup  config.status: creating src/R.pm  config.status: creating R/perl5lib.R  making target all in RinPerlMakefile  gcc -std=gnu99 -I/usr/share/R/include -I.  -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib/perl/5.14/CORE  -DPERL_POLLUTE   -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1     -fpic  -O3 -pipe  -g -c Converters.c -o Converters.o  Converters.c: In function 'fromPerl':  Converters.c:323:28: error: 'sv_undef' undeclared (first use in this function)  Converters.c:323:28: note: each undeclared identifier is reported only once for each function it appears in  Converters.c: In function 'toPerl':  Converters.c:483:12: error: 'sv_undef' undeclared (first use in this function)  Converters.c: In function 'PerlAddHomogeneousElement':  Converters.c:1056:7: error: duplicate case value  Converters.c:1041:7: error: previously used here  make: *** [Converters.o] Error 1  calling make -f Makefile.perl install  Makefile out-of-date with respect to Makefile.PL  Cleaning current config before rebuilding Makefile...  make -f Makefile.perl.old clean > /dev/null 2>&1  /usr/bin/perl Makefile.PL   Warning: -L. changed to -L/home/panayiotis/Desktop/RSPerl/src/.  Note (probably harmless): No library found for -lPerlConverter  Writing Makefile.perl for R  Writing MYMETA.yml  ==> Your Makefile has been rebuilt. <==  ==> Please rerun the make command.  <==  false  make: *** [Makefile.perl] Error 1  chmod: changing permissions of `blib/lib/R.pm': Operation not permitted  Finished configuration  ** libs  gcc -std=gnu99 -I/usr/share/R/include -I.  -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib/perl/5.14/CORE  -DPERL_POLLUTE   -D_R_=1 -DUSE_R=1 -DUSE_TOPLEVEL_EXEC=1 -DWITH_R_IN_PERL=1     -fpic  -O3 -pipe  -g -c Converters.c -o Converters.o  Converters.c: In function ‘fromPerl’:  Converters.c:323:28: error: ‘sv_undef’ undeclared (first use in this function)  Converters.c:323:28: note: each undeclared identifier is reported only once for each function it appears in  Converters.c: In function ‘toPerl’:  Converters.c:483:12: error: ‘sv_undef’ undeclared (first use in this function)  Converters.c: In function ‘PerlAddHomogeneousElement’:  Converters.c:1056:7: error: duplicate case value  Converters.c:1041:7: error: previously used here  make: *** [Converters.o] Error 1  ERROR: compilation failed for package ‘RSPerl’  * removing ‘/usr/local/lib/R/site-library/RSPerl’  

How can I resolve this issue?


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